getting time out on VPN interface for certain ports.
Alright. So Freeradius is listening on all IP addresses on both ports. That looks about right.

In this case I'd recommend to try SecureNAT once. With this setup SoftEther handles the whole routing and NAT jobs at its own without your input and it also comes with a DHCP server that you can configure. It might solve the issues you are having.

Usually if an application listens on all system IP address you should be able to access it from the TUN/TAP network adapter connected clients like you would connect to it over the Internet when you use the IP addresses that are are assigned to the virtual network.
Well it seems I am out of any luck. The main problem is I am using centralized freeradius server and php site to manage this.
And freeradius needed comunicate with evey pc/router this via a VPN . i have some pc behind nated public ip so its only accacable via vpn.

Any example that shows or give me idea to any tut will be very helpfull?
As far as I understood based on all your problem explanations and configurations/command outputs you are running SoftEther in the local bridge mode with TUN/TAP. This requires a more complex network setup, especially if you serve clients behind CGNAT and of course this requirements the proper advanced knowledge to implement the whole setup.

I advised you to use the SecureNAT feature of SoftEther that handles the whole routing and switching by itself and includes a DHCP server. It also has a special feature called NAT-T (NAT traversal). This is a very important feature if you have users behind strongly NATed networks like CGNAT or strong firewalls and so on.

So far I don't see anything implying that you changed anything with your current setup. Hence why I think you are either ignoring suggestions in the replies made or I don't know. Maybe we don't explain it well enough? On the other hand your sentences are rather hard to understand, too.
Well I have made all the changes you have told . Even added a client and tried to ssh, but failed.
I am also working on my expression.
Alright! Thank you for updating us. I am seriously out of clues right now.

Is Freeradius the only server that you cannot connect to on the VPN gateway?
I think you should be checking the subnet of of Venet0 interface its, which means each PC that connects to the server is individual. Fix your subnet, it will fix your issue. If you are unsure what subnet mask is, then in that case i suggest you look up google. Because, this subnet mask determines the number of PCs to be considered in the same LAN segment.
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Thank you to and for FREE VPS  Angel
Here is my last question,
I will make it a single liner.
Softether(ip for server is is installed in my VPS. A website is also hosted here,
In softether secure nat is enabled , every VPN user can connected and can use Internet.
Now here is my ifconfig
lo        Link encap:Local Loopback
          inet addr:  Mask:
          inet6 addr: ::1/128 Scope:Host
          UP LOOPBACK RUNNING  MTU:65536  Metric:1
          RX packets:857 errors:0 dropped:0 overruns:0 frame:0
          TX packets:857 errors:0 dropped:0 overruns:0 carrier:0
          collisions:0 txqueuelen:0
          RX bytes:2311602 (2.3 MB)  TX bytes:2311602 (2.3 MB)

venet0    Link encap:UNSPEC  HWaddr 00-00-00-00-00-00-00-00-00-00-00-00-00-00-00-00
          inet addr:  P-t-P:  Bcast:  Mask:
          RX packets:144365 errors:0 dropped:0 overruns:0 frame:0
          TX packets:65626 errors:0 dropped:70 overruns:0 carrier:0
          collisions:0 txqueuelen:0
          RX bytes:187296986 (187.2 MB)  TX bytes:11713257 (11.7 MB)

venet0:0  Link encap:UNSPEC  HWaddr 00-00-00-00-00-00-00-00-00-00-00-00-00-00-00-00
          inet addr:xx.xx.xx.xx  P-t-P:xx.xx.xx.xx  Bcast:xx.xx.xx.xx  Mask:
and here is my route
default dev venet0  scope link
So my only question is if a client from wants to use the mysql from the vps(softether server & ip is , how to do it?
Enable Remote MySQL and make MySQL listen on the IP so that users can access it from network they are in.

A guide:

On clients you use the IP as hostname/address for MySQL servers.

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